1 citations · 5 across the 20 of their papers we have counts for
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FP-AbDiff: Improving Score-based Antibody Design by Capturing Nonequilibrium Dynamics through the Underlying Fokker-Planck Equation
Jiameng Chen, Yida Xiong, Kun Li +4
Computational antibody design holds immense promise for therapeutic discovery, yet existing generative models are fundamentally limited by two core challenges: (i) a lack of dynami…
Transport-Coupled Bayesian Flows for Molecular Graph Generation
Yida Xiong, Jiameng Chen, Kun Li +5
Molecular graph generation (MGG) is essentially a multi-class generative task, aimed at predicting categories of atoms and bonds under strict chemical and structural constraints. H…
Zero-Shot Learning with Subsequence Reordering Pretraining for Compound-Protein Interaction
Hongzhi Zhang, Zhonglie Liu, Kun Meng +6
Given the vastness of chemical space and the ongoing emergence of previously uncharacterized proteins, zero-shot compound-protein interaction (CPI) prediction better reflects the p…
Antibody Design and Optimization with Multi-scale Equivariant Graph Diffusion Models for Accurate Complex Antigen Binding
Jiameng Chen, Xiantao Cai, Jia Wu +1
Antibody design remains a critical challenge in therapeutic and diagnostic development, particularly for complex antigens with diverse binding interfaces. Current computational met…
Exploiting Text Semantics for Few and Zero Shot Node Classification on Text-attributed Graph
Yuxiang Wang, Xiao Yan, Shiyu Jin +6
Text-attributed graph (TAG) provides a text description for each graph node, and few- and zero-shot node classification on TAGs have many applications in fields such as academia an…
Knowledge-aware contrastive heterogeneous molecular graph learning
Mukun Chen, Jia Wu, Shirui Pan +4
Molecular representation learning is pivotal in predicting molecular properties and advancing drug design. Traditional methodologies, which predominantly rely on homogeneous graph…
Graph-structured Small Molecule Drug Discovery Through Deep Learning: Progress, Challenges, and Opportunities
Kun Li, Yida Xiong, Hongzhi Zhang +4
Due to their excellent drug-like and pharmacokinetic properties, small molecule drugs are widely used to treat various diseases, making them a critical component of drug discovery.…
Can Molecular Evolution Mechanism Enhance Molecular Representation?
Kun Li, Longtao Hu, Xiantao Cai +2
Molecular evolution is the process of simulating the natural evolution of molecules in chemical space to explore potential molecular structures and properties. The relationships be…