7 citations · 17 across the 8 of their papers we have counts for
9 papers
A Compact Weight-Space Integer Programming Formulation for Balanced Minimum Evolution
Leonid Chindelevitch, Matthew Penn, Samir Bhatt
Balanced Minimum Evolution (BME) reconstructs an unrooted binary phylogenetic tree from a distance matrix by minimizing the length , which is linear in…
Phylogenetics in a warm place: computational aspects of the Tropical Grassmannian
Samir Bhatt, John Sabol, Papri Dey +3
Phylogenetic trees provide a fundamental representation of evolutionary relationships, yet the combinatorial explosion of possible tree topologies renders inference computationally…
Dynamic Graph-Based Forecasts of Bookmakers' Odds in Professional Tennis
Matthew J Penn, Jed Michael, Samir Bhatt
Bookmakers' odds consistently provide one of the most accurate methods for predicting the results of professional tennis matches. However, these odds usually only become available…
phylo2vec: a library for vector-based phylogenetic tree manipulation
Neil Scheidwasser, Ayush Nag, Matthew J Penn +6
Phylogenetics is a fundamental component of evolutionary analysis frameworks in biology and linguistics. Recently, the advent of large-scale genomics and the SARS-CoV-2 pandemic ha…
Generalised Bayesian distance-based phylogenetics for the genomics era
Matthew J. Penn, Neil Scheidwasser, Mark P. Khurana +3
As whole genomes become widely available, maximum likelihood and Bayesian phylogenetic methods are demonstrating their limits in meeting the escalating computational demands. Conve…
Continuous football player tracking from discrete broadcast data
Matthew J. Penn, Christl A. Donnelly, Samir Bhatt
Player tracking data remains out of reach for many professional football teams as their video feeds are not sufficiently high quality for computer vision technologies to be used. T…
Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees
Matthew J Penn, Neil Scheidwasser, Joseph Penn +3
Phylogenetics is now fundamental in life sciences, providing insights into the earliest branches of life and the origins and spread of epidemics. However, finding suitable phylogen…
Phylo2Vec: a vector representation for binary trees
Matthew J Penn, Neil Scheidwasser, Mark P Khurana +3
Binary phylogenetic trees inferred from biological data are central to understanding the shared history among evolutionary units. However, inferring the placement of latent nodes i…
Intrinsic Randomness in Epidemic Modelling Beyond Statistical Uncertainty
Matthew J. Penn, Daniel J. Laydon, Joseph Penn +7
Uncertainty can be classified as either aleatoric (intrinsic randomness) or epistemic (imperfect knowledge of parameters). The majority of frameworks assessing infectious disease r…