5 papers
De novo molecular structure elucidation from mass spectra via flow matching
Ghaith Mqawass, Tuan Le, Fabian Theis +1
Mass spectrometry is a powerful and widely used tool for identifying molecular structures due to its sensitivity and ability to profile complex samples. However, translating spectr…
ACE-ICD: Acronym Expansion As Data Augmentation For Automated ICD Coding
Tuan-Dung Le, Shohreh Haddadan, Thanh Q. Thieu
Automatic ICD coding, the task of assigning disease and procedure codes to electronic medical records, is crucial for clinical documentation and billing. While existing methods pri…
Extracting Patient History from Clinical Text: A Comparative Study of Clinical Large Language Models
Hieu Nghiem, Tuan-Dung Le, Suhao Chen +7
Extracting medical history entities (MHEs) related to a patient's chief complaint (CC), history of present illness (HPI), and past, family, and social history (PFSH) helps structur…
Low-resource classification of mobility functioning information in clinical sentences using large language models
Tuan Dung Le, Thanh Duong, Thanh Thieu
Objective: Function is increasingly recognized as an important indicator of whole-person health. This study evaluates the ability of publicly available large language models (LLMs)…
Leveraging deep active learning to identify low-resource mobility functioning information in public clinical notes
Tuan-Dung Le, Zhuqi Miao, Samuel Alvarado +3
Function is increasingly recognized as an important indicator of whole-person health, although it receives little attention in clinical natural language processing research. We int…