112 citations · 369 across the 25 of their papers we have counts for
4 papers · 1 filter
Reconsidering the significance of genomic word frequency
Miklós Csűrös, Laurent Noé, Gregory Kucherov
We propose that the distribution of DNA words in genomic sequences can be primarily characterized by a double Pareto-lognormal distribution, which explains lognormal and power-law…
Estimating seed sensitivity on homogeneous alignments
Gregory Kucherov, Laurent Noe, Yann Ponty
We address the problem of estimating the sensitivity of seed-based similarity search algorithms. In contrast to approaches based on Markov models [18, 6, 3, 4, 10], we study the es…
A unifying framework for seed sensitivity and its application to subset seeds (Extended abstract)
Gregory Kucherov, Laurent Noe, Mikhail Roytberg
We propose a general approach to compute the seed sensitivity, that can be applied to different definitions of seeds. It treats separately three components of the seed sensitivity…
A unifying framework for seed sensitivity and its application to subset seeds
Gregory Kucherov, Laurent Noé, Mihkail Roytberg
We propose a general approach to compute the seed sensitivity, that can be applied to different definitions of seeds. It treats separately three components of the seed sensitivity…