339 citations · 427 across the 9 of their papers we have counts for
9 papers
Jaccard/Tanimoto similarity test and estimation methods
Neo Christopher Chung, Błażej Miasojedow, Michał Startek +1
Binary data are used in a broad area of biological sciences. Using binary presence-absence data, we can evaluate species co-occurrences that help elucidate relationships among orga…
Assigning peaks and modeling ETD in top-down mass spectrometry
Mateusz Krzysztof Łącki, Frederik Lermyte, Błażej Miasojedow +5
Among many techniques of modern mass spectrometry, the top down methods are becoming continuously more popular in the overall strive to describe the proteome. These techniques are…
Modelling the proliferation of transposable elements in populations under environmental stress
K. Gogolewski, M. Startek, A. Gambin +1
In this article, we investigate the evolution of sexual diploid populations which are hosts for active TE families. Our purpose is to explore the relationship between the environme…
Computational model of sphingolipids metabolism: a case study of Alzheimer's disease
Agata Charzyńska, Weronika Wronowska, Karol Nienałtowski +1
Background: Sphingolipids - as suggested by the prefix in their name - are mysterious molecules, which play surprisingly various roles in opposable cellular processes, like autopha…
Law of Localised Fine Structure with application in mass spectrometry
Mateusz Krzysztof Łącki, Anna Gambin
This paper presents a brand new methodology to deal with isotopic fine structure calculations. By using the Poisson approximation in an entirely novel way, we introduce mathematica…
StochDecomp - Matlab package for noise decomposition in stochastic biochemical systems
Tomasz Jetka, Agata Charzynska, Anna Gambin +2
Stochasticity is an indispensable aspect of biochemical processes at the cellular level. Studies on how the noise enters and propagates in biochemical systems provided us with nont…