6 papers
An AI agent for treatment reasoning over a biomedical tool universe
Shanghua Gao, Ayush Noori, Richard Zhu +13
Treatment reasoning underpins every therapeutic decision, integrating disease context, comorbidities, medications, contraindications, and evolving biomedical knowledge to select an…
BioMedArena: An Open-source Toolkit for Building and Evaluating Biomedical Deep Research Agents
Jinge Wu, Hongjian Zhou, Mingde Zeng +8
Reproducing and comparing deep research agents today is hard: the same backbone evaluated on the same benchmark can report different accuracies across papers because the harness an…
A global log for medical AI
Ayush Noori, Aaron E. Boussina, Hai Ho Bich +48
Modern computer systems rely on syslog, a universal protocol that records critical events across heterogeneous infrastructure. Medicine's rapidly growing AI stack has no equivalent…
Unifying biomedical knowledge in a modern multimodal graph
Lucas Vittor, Ayush Noori, Iñaki Arango +5
Biomedical knowledge graphs (KGs) are widely used in the life sciences, yet many are derived from unstructured documents and therefore lack schema-level constraints, whereas graphs…
Autonomous Knowledge Graph Exploration with Adaptive Breadth-Depth Retrieval
JoaquÃn Polonuer, Lucas Vittor, Iñaki Arango +4
Retrieving evidence for language model queries from knowledge graphs requires balancing broad search across the graph with multi-hop traversal to follow relational links. Similarit…
Graph AI generates neurological hypotheses validated in molecular, organoid, and clinical systems
Ayush Noori, JoaquÃn Polonuer, Katharina Meyer +26
Neurological diseases are the leading global cause of disability, yet most lack disease-modifying treatments. We present PROTON, a heterogeneous graph transformer that generates te…