5 papers
ProSt: computing, storing and visualizing attributes of prokaryotic genomes
Giorgio Gonnella
Prokaryotic organisms usually possess compact genomes, which are particularly suitable to complete sequencing with existing technologies, which led to an escalating accumulation of…
Collection of prokaryotic genome contents expectation rules from scientific literature
Serena Lam, Giorgio Gonnella
Shaped by natural selection and other evolutionary forces, an organism's evolutionary history is reflected through its genome sequence, content of functional elements and organizat…
EGC: a format for expressing prokaryotic genomes content expectations
Giorgio Gonnella
The number of available genomes of prokaryotic organisms is rapidly growing enabling comparative genomics studies. The comparison of genomes of organisms with a common phenotype, h…
Unambiguosly expressing expectations about the content of prokaryotic genomes
Giorgio Gonnella
In recent years, the sequencing, assembling and annotation of prokaryotic genomes has become increasingly easy and cheap. Thus it becomes increasingly feasible and interesting to p…
Designing text representations for existing data using the TextFormats Specification Language
Giorgio Gonnella
TextFormats is a software system for efficient and user-friendly creation of text format specifications, accessible from multiple programming languages (C/C++, Python, Nim) and the…