5 papers
Is Clinical Text Enough? A Multimodal Study on Mortality Prediction in Heart Failure Patients
Oumaima El Khettari, Virgile Barthet, Guillaume Hocquet +3
Accurate short-term mortality prediction in heart failure (HF) remains challenging, particularly when relying on structured electronic health record (EHR) data alone. We evaluate t…
MedInjection-FR: Exploring the Role of Native, Synthetic, and Translated Data in Biomedical Instruction Tuning
Ikram Belmadani, Oumaima El Khettari, Pacôme Constant dit Beaufils +2
Instruction tuning has become essential for adapting large language models (LLMs) to follow domain-specific prompts. Yet, in specialized fields such as medicine, the scarcity of hi…
Who Judges the Judge? Evaluating LLM-as-a-Judge for French Medical open-ended QA
Ikram Belmadani, Oumaima El Khettari, Pacôme Constant dit Beaufils +2
Automatic evaluation of medical open-ended question answering (OEQA) remains challenging due to the need for expert annotations. We evaluate whether large language models (LLMs) ca…
Summarization for Generative Relation Extraction in the Microbiome Domain
Oumaima El Khettari, Solen Quiniou, Samuel Chaffron
We explore a generative relation extraction (RE) pipeline tailored to the study of interactions in the intestinal microbiome, a complex and low-resource biomedical domain. Our meth…
Building a Corpus for Biomedical Relation Extraction of Species Mentions
Oumaima El Khettari, Solen Quiniou, Samuel Chaffron
We present a manually annotated corpus, Species-Species Interaction, for extracting meaningful binary relations between species, in biomedical texts, at sentence level, with a focu…