3 papers
cs.CL2026
Supporting Workflow Reproducibility by Linking Bioinformatics Tools across Papers and Executable Code
Clémence Sebe, Clémence Sebe, Olivier Ferret +5
Motivation: The rapid growth of biological data has intensified the need for transparent, reproducible, and well-documented computational workflows. The ability to clearly connect…
cs.CL2025
Extracting Information in a Low-resource Setting: Case Study on Bioinformatics Workflows
Clémence Sebe, Clémence Sebe, Sarah Cohen-Boulakia +3
Bioinformatics workflows are essential for complex biological data analyses and are often described in scientific articles with source code in public repositories. Extracting detai…
cs.CL2024
From LIMA to DeepLIMA: following a new path of interoperability
Victor Bocharov, Romaric Besançon, Gaël de Chalendar +2
In this article, we describe the architecture of the LIMA (Libre Multilingual Analyzer) framework and its recent evolution with the addition of new text analysis modules based on d…