2 citations · 4 across the 3 of their papers we have counts for
3 papers
Pattern or Artifact? Interactively Exploring Embedding Quality with TRACE
Edith Heiter, Liesbet Martens, Ruth Seurinck +4
This paper presents TRACE, a tool to analyze the quality of 2D embeddings generated through dimensionality reduction techniques. Dimensionality reduction methods often prioritize p…
Unraveling cell-cell communication with NicheNet by inferring active ligands from transcriptomics data
Chananchida Sang-aram, Robin Browaeys, Ruth Seurinck +1
Ligand-receptor interactions constitute a fundamental mechanism of cell-cell communication and signaling. NicheNet is a well-established computational tool that infers ligand-recep…
Revised Conditional t-SNE: Looking Beyond the Nearest Neighbors
Edith Heiter, Bo Kang, Ruth Seurinck +1
Conditional t-SNE (ct-SNE) is a recent extension to t-SNE that allows removal of known cluster information from the embedding, to obtain a visualization revealing structure beyond…