5 papers
TopoAgent: An Agentic Framework for Automated Topology Learning in Medical Imaging
Guangyu Meng, Pengfei Gu, Xueyang Li +3
Topological data analysis (TDA), particularly persistent homology (PH), captures geometric structural properties in medical images (e.g., connected components, loops, shape charact…
MS-COOT: Comparing Morse-Smale Complexes with Co-Optimal Transport
Guangyu Meng, Mingzhe Li, Erin Wolf Chambers
Understanding and comparing structures in scalar fields is a central challenge in scientific visualization, with applications ranging from feature analysis to temporal and structur…
TopoCL: Topological Contrastive Learning for Medical Imaging
Guangyu Meng, Pengfei Gu, Peixian Liang +3
Contrastive learning (CL) has become a powerful approach for learning representations from unlabeled images. However, existing CL methods focus predominantly on visual appearance f…
Cell Instance Segmentation: The Devil Is in the Boundaries
Peixian Liang, Yifan Ding, Yizhe Zhang +9
State-of-the-art (SOTA) methods for cell instance segmentation are based on deep learning (DL) semantic segmentation approaches, focusing on distinguishing foreground pixels from b…
Efficient approximation of Earth Mover's Distance Based on Nearest Neighbor Search
Guangyu Meng, Ruyu Zhou, Liu Liu +5
Earth Mover's Distance (EMD) is an important similarity measure between two distributions, used in computer vision and many other application domains. However, its exact calculatio…