32 citations · 97 across the 27 of their papers we have counts for
4 papers · 1 filter
MergeDNA: Context-aware Genome Modeling with Dynamic Tokenization through Token Merging
Siyuan Li, Kai Yu, Anna Wang +7
Modeling genomic sequences faces two unsolved challenges: the information density varies widely across different regions, while there is no clearly defined minimum vocabulary unit.…
Artificial Intelligence for Central Dogma-Centric Multi-Omics: Challenges and Breakthroughs
Lei Xin, Caiyun Huang, Hao Li +8
With the rapid development of high-throughput sequencing platforms, an increasing number of omics technologies, such as genomics, metabolomics, and transcriptomics, are being appli…
GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models
Zicheng Liu, Jiahui Li, Siyuan Li +5
The Genomic Foundation Model (GFM) paradigm is expected to facilitate the extraction of generalizable representations from massive genomic data, thereby enabling their application…
VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling
Siyuan Li, Zedong Wang, Zicheng Liu +5
Similar to natural language models, pre-trained genome language models are proposed to capture the underlying intricacies within genomes with unsupervised sequence modeling. They h…