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cs.LG2025
Let Physics Guide Your Protein Flows: Topology-aware Unfolding and Generation
Yogesh Verma, Markus Heinonen, Vikas Garg
Protein structure prediction and folding are fundamental to understanding biology, with recent deep learning advances reshaping the field. Diffusion-based generative models have re…
cs.LG2025
Positional Encoding meets Persistent Homology on Graphs
Yogesh Verma, Amauri H. Souza, Vikas Garg
The local inductive bias of message-passing graph neural networks (GNNs) hampers their ability to exploit key structural information (e.g., connectivity and cycles). Positional enc…
cs.LG2025
Robust Simulation-Based Inference under Missing Data via Neural Processes
Yogesh Verma, Ayush Bharti, Vikas Garg
Simulation-based inference (SBI) methods typically require fully observed data to infer parameters of models with intractable likelihood functions. However, datasets often contain…