8 citations · 37 across the 14 of their papers we have counts for
7 papers · 1 filter
Elastic Information Bottleneck
Yuyan Ni, Yanyan Lan, Ao Liu +1
Information bottleneck is an information-theoretic principle of representation learning that aims to learn a maximally compressed representation that preserves as much information…
Sliced Denoising: A Physics-Informed Molecular Pre-Training Method
Yuyan Ni, Shikun Feng, Wei-Ying Ma +2
While molecular pre-training has shown great potential in enhancing drug discovery, the lack of a solid physical interpretation in current methods raises concerns about whether the…
ProFSA: Self-supervised Pocket Pretraining via Protein Fragment-Surroundings Alignment
Bowen Gao, Yinjun Jia, Yuanle Mo +4
Pocket representations play a vital role in various biomedical applications, such as druggability estimation, ligand affinity prediction, and de novo drug design. While existing ge…
Fractional Denoising for 3D Molecular Pre-training
Shikun Feng, Yuyan Ni, Yanyan Lan +2
Coordinate denoising is a promising 3D molecular pre-training method, which has achieved remarkable performance in various downstream drug discovery tasks. Theoretically, the objec…
Symmetry-Informed Geometric Representation for Molecules, Proteins, and Crystalline Materials
Shengchao Liu, Weitao Du, Yanjing Li +10
Artificial intelligence for scientific discovery has recently generated significant interest within the machine learning and scientific communities, particularly in the domains of…
Explore and Exploit the Diverse Knowledge in Model Zoo for Domain Generalization
Yimeng Chen, Tianyang Hu, Fengwei Zhou +2
The proliferation of pretrained models, as a result of advancements in pretraining techniques, has led to the emergence of a vast zoo of publicly available models. Effectively util…
A Group Symmetric Stochastic Differential Equation Model for Molecule Multi-modal Pretraining
Shengchao Liu, Weitao Du, Zhiming Ma +2
Molecule pretraining has quickly become the go-to schema to boost the performance of AI-based drug discovery. Naturally, molecules can be represented as 2D topological graphs or 3D…