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q-bio.GN2025
Knowledge-guided Contextual Gene Set Analysis Using Large Language Models
Zhizheng Wang, Chi-Ping Day, Chih-Hsuan Wei +9
Gene set analysis (GSA) is a foundational approach for interpreting genomic data of diseases by linking genes to biological processes. However, conventional GSA methods overlook cl…
cs.CL2025
Enhancing Biomedical Relation Extraction with Directionality
Po-Ting Lai, Chih-Hsuan Wei, Shubo Tian +2
Biological relation networks contain rich information for understanding the biological mechanisms behind the relationship of entities such as genes, proteins, diseases, and chemica…