5 citations · 12 across the 35 of their papers we have counts for
11 papers · 1 filter
Converting Time Series Data to Numeric Representations Using Alphabetic Mapping and k-mer strategy
Sarwan Ali, Tamkanat E Ali, Imdad Ullah Khan +1
In the realm of data analysis and bioinformatics, representing time series data in a manner akin to biological sequences offers a novel approach to leverage sequence analysis techn…
Hilbert Curve Based Molecular Sequence Analysis
Sarwan Ali, Tamkanat E Ali, Imdad Ullah Khan +1
Accurate molecular sequence analysis is a key task in the field of bioinformatics. To apply molecular sequence classification algorithms, we first need to generate the appropriate…
Neuromorphic Spiking Neural Network Based Classification of COVID-19 Spike Sequences
Taslim Murad, Prakash Chourasia, Sarwan Ali +2
The availability of SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) virus data post-COVID has reached exponentially to an enormous magnitude, opening research doors to…
Computing Gram Matrix for SMILES Strings using RDKFingerprint and Sinkhorn-Knopp Algorithm
Sarwan Ali, Haris Mansoor, Prakash Chourasia +2
In molecular structure data, SMILES (Simplified Molecular Input Line Entry System) strings are used to analyze molecular structure design. Numerical feature representation of SMILE…
EPIC: Enhancing Privacy through Iterative Collaboration
Prakash Chourasia, Heramb Lonkar, Sarwan Ali +1
Advancements in genomics technology lead to a rising volume of viral (e.g., SARS-CoV-2) sequence data, resulting in increased usage of machine learning (ML) in bioinformatics. Trad…
MIK: Modified Isolation Kernel for Biological Sequence Visualization, Classification, and Clustering
Sarwan Ali, Prakash Chourasia, Haris Mansoor +2
The t-Distributed Stochastic Neighbor Embedding (t-SNE) has emerged as a popular dimensionality reduction technique for visualizing high-dimensional data. It computes pairwise simi…
Position Specific Scoring Is All You Need? Revisiting Protein Sequence Classification Tasks
Sarwan Ali, Taslim Murad, Prakash Chourasia +4
Understanding the structural and functional characteristics of proteins are crucial for developing preventative and curative strategies that impact fields from drug discovery to po…
DANCE: Deep Learning-Assisted Analysis of Protein Sequences Using Chaos Enhanced Kaleidoscopic Images
Taslim Murad, Prakash Chourasia, Sarwan Ali +2
Cancer is a complex disease characterized by uncontrolled cell growth. T cell receptors (TCRs), crucial proteins in the immune system, play a key role in recognizing antigens, incl…
Nearest Neighbor CCP-Based Molecular Sequence Analysis
Sarwan Ali, Prakash Chourasia, Bipin Koirala +1
Molecular sequence analysis is crucial for comprehending several biological processes, including protein-protein interactions, functional annotation, and disease classification. Th…
Expanding Chemical Representation with k-mers and Fragment-based Fingerprints for Molecular Fingerprinting
Sarwan Ali, Prakash Chourasia, Murray Patterson
This study introduces a novel approach, combining substruct counting, -mers, and Daylight-like fingerprints, to expand the representation of chemical structures in SMILES string…
A Universal Non-Parametric Approach For Improved Molecular Sequence Analysis
Sarwan Ali, Tamkanat E Ali, Prakash Chourasia +1
In the field of biological research, it is essential to comprehend the characteristics and functions of molecular sequences. The classification of molecular sequences has seen wide…