activity
20222025
most citedGPS++: An Optimised Hybrid MPNN/Transformer for Molecular Property Prediction

10 citations · 13 across the 9 of their papers we have counts for

collaborators

9 papers

cs.LG2025

Self-Refining Training for Amortized Density Functional Theory

Majdi Hassan, Cristian Gabellini, Hatem Helal +2

Density Functional Theory (DFT) allows for predicting all the chemical and physical properties of molecular systems from first principles by finding an approximate solution to the…

cs.LG2024

MESS: Modern Electronic Structure Simulations

Hatem Helal, Andrew Fitzgibbon

Electronic structure simulation (ESS) has been used for decades to provide quantitative scientific insights on an atomistic scale, enabling advances in chemistry, biology, and mate…

cs.LG2024

Reducing the Cost of Quantum Chemical Data By Backpropagating Through Density Functional Theory

Alexander Mathiasen, Hatem Helal, Paul Balanca +6

Density Functional Theory (DFT) accurately predicts the quantum chemical properties of molecules, but scales as . Schütt et al. (2019) successfully appro…

cs.LG2023

Generating QM1B with PySCF

Alexander Mathiasen, Hatem Helal, Kerstin Klaser +6

The emergence of foundation models in Computer Vision and Natural Language Processing have resulted in immense progress on downstream tasks. This progress was enabled by datasets w…

cs.LG2023★ 2 cited

GPS++: Reviving the Art of Message Passing for Molecular Property Prediction

Dominic Masters, Josef Dean, Kerstin Klaser +9

We present GPS++, a hybrid Message Passing Neural Network / Graph Transformer model for molecular property prediction. Our model integrates a well-tuned local message passing compo…

q-bio.QM2022★ 10 cited

GPS++: An Optimised Hybrid MPNN/Transformer for Molecular Property Prediction

Dominic Masters, Josef Dean, Kerstin Klaser +7

This technical report presents GPS++, the first-place solution to the Open Graph Benchmark Large-Scale Challenge (OGB-LSC 2022) for the PCQM4Mv2 molecular property prediction task.…

cs.LG2022★ 1 cited

Extreme Acceleration of Graph Neural Network-based Prediction Models for Quantum Chemistry

Hatem Helal, Jesun Firoz, Jenna Bilbrey +5

Molecular property calculations are the bedrock of chemical physics. High-fidelity \textit{ab initio} modeling techniques for computing the molecular properties can be prohibitivel…

cs.LG2022

Reducing Down(stream)time: Pretraining Molecular GNNs using Heterogeneous AI Accelerators

Jenna A. Bilbrey, Kristina M. Herman, Henry Sprueill +6

The demonstrated success of transfer learning has popularized approaches that involve pretraining models from massive data sources and subsequent finetuning towards a specific task…

cs.LG2022

Tuple Packing: Efficient Batching of Small Graphs in Graph Neural Networks

Mario Michael Krell, Manuel Lopez, Sreenidhi Anand +2

When processing a batch of graphs in machine learning models such as Graph Neural Networks (GNN), it is common to combine several small graphs into one overall graph to accelerate…