5 papers
An Agentic Generative Large Language Model for Treatment Planning of Colorectal Cancer
Mengxian Lyu, Cheng Peng, Tim Jang +18
Treatment planning in precision oncology requires synthesizing heterogeneous patient information with rapidly evolving clinical guidelines to ensure guideline-concordant care. Whil…
Exploring Post-Training Alignment of Small Language Models for Biomedical Data-to-Text Generation: A Case Study of Medication Leaflet
Xi Yang, Guodong Liu, Chuqin Li +10
The paper compares several post‑training alignment methods for small language models on the task of converting biomedical data into patient‑friendly medication leaflets, showing th…
Prompt, Plan, Extract: Zero-Shot Agentic LLMs Workflows for Lung Pathology Extraction from Clinical Narratives
Aman Pathak, Cheng Peng, Mengxian Lyu +8
Information extraction from pathology reports is essential for cancer staging, tumor registry population. Yet key data remains embedded in narrative reports, making manual extracti…
Narrative Feature or Structured Feature? A Study of Large Language Models to Identify Cancer Patients at Risk of Heart Failure
Ziyi Chen, Mengyuan Zhang, Mustafa Mohammed Ahmed +4
Cancer treatments are known to introduce cardiotoxicity, negatively impacting outcomes and survivorship. Identifying cancer patients at risk of heart failure (HF) is critical to im…
A Topic Modeling Analysis of Stigma Dimensions, Social, and Related Behavioral Circumstances in Clinical Notes Among Patients with HIV
Ziyi Chen, Yiyang Liu, Mattia Prosperi +5
Objective: To characterize stigma dimensions, social, and related behavioral circumstances in people living with HIV(PLWHs) seeking care, using NLP methods applied to a large colle…