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cs.LG2025★ 1 cited
Lightweight MSA Design Advances Protein Folding From Evolutionary Embeddings
Hanqun Cao, Xinyi Zhou, Zijun Gao +7
Protein structure prediction often hinges on multiple sequence alignments (MSAs), which underperform on low-homology and orphan proteins. We introduce PLAME, a lightweight MSA desi…
cs.LG2025
A deep reinforcement learning platform for antibiotic discovery
Hanqun Cao, Marcelo D. T. Torres, Jingjie Zhang +8
Antimicrobial resistance (AMR) is projected to cause up to 10 million deaths annually by 2050, underscoring the urgent need for new antibiotics. Here we present ApexAmphion, a deep…
cs.LG2024
DEL-Ranking: Ranking-Correction Denoising Framework for Elucidating Molecular Affinities in DNA-Encoded Libraries
Hanqun Cao, Mutian He, Ning Ma +3
DNA-encoded library (DEL) screening has revolutionized the detection of protein-ligand interactions through read counts, enabling rapid exploration of vast chemical spaces. However…