activity
20222025
most citedVirus2Vec: Viral Sequence Classification Using Machine Learning

5 citations · 8 across the 16 of their papers we have counts for

collaborators

18 papers

cs.CG2025

Uncovering Hierarchical Structure in LLM Embeddings with -Hyperbolicity, Ultrametricity, and Neighbor Joining

Prakash Chourasia, Sarwan Ali, Murray Patterson

The rapid advancement of large language models (LLMs) has enabled significant strides in various fields. This paper introduces a novel approach to evaluate the effectiveness of LLM…

cs.LG2025

Boosting t-SNE Efficiency for Sequencing Data: Insights from Kernel Selection

Avais Jan, Prakash Chourasia, Sarwan Ali +1

Dimensionality reduction techniques are essential for visualizing and analyzing high-dimensional biological sequencing data. t-distributed Stochastic Neighbor Embedding (t-SNE) is…

cs.NE2024

Neuromorphic Spiking Neural Network Based Classification of COVID-19 Spike Sequences

Taslim Murad, Prakash Chourasia, Sarwan Ali +2

The availability of SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) virus data post-COVID has reached exponentially to an enormous magnitude, opening research doors to…

cs.LG2024

Computing Gram Matrix for SMILES Strings using RDKFingerprint and Sinkhorn-Knopp Algorithm

Sarwan Ali, Haris Mansoor, Prakash Chourasia +2

In molecular structure data, SMILES (Simplified Molecular Input Line Entry System) strings are used to analyze molecular structure design. Numerical feature representation of SMILE…

cs.LG20241 cited

DWFL: Enhancing Federated Learning through Dynamic Weighted Averaging

Prakash Chourasia, Tamkanat E Ali, Sarwan Ali +1

Federated Learning (FL) is a distributed learning technique that maintains data privacy by providing a decentralized training method for machine learning models using distributed b…

cs.LG2024

EPIC: Enhancing Privacy through Iterative Collaboration

Prakash Chourasia, Heramb Lonkar, Sarwan Ali +1

Advancements in genomics technology lead to a rising volume of viral (e.g., SARS-CoV-2) sequence data, resulting in increased usage of machine learning (ML) in bioinformatics. Trad…