5 citations · 5 across the 6 of their papers we have counts for
5 papers · 1 filter
Endeavor: Efficient PairHMM for Detection of DNA Variants in Genome-Scale Datasets
Miguel Graça, Aleksandar Ilic
DNA variant calling represents a key operation in bioinformatics pipelines that aims at identifying genetic variants. Given an evidenced explosion in genomic data availability, the…
CARM Tool: Cache-Aware Roofline Model Automatic Benchmarking and Application Analysis
José Morgado, Leonel Sousa, Aleksandar Ilic
In recent years, HPC systems and CPU architectures as their central components, have become increasingly complex, making application development and optimization quite challenging.…
PRISM: Processing-In-Memory Sparse MTTKRP for Tensor Decomposition Acceleration
Daniel Pacheco, Leonel Sousa, Aleksandar Ilic
Sparse tensors are the most used representation of sparse multidimensional data. Operations that decompose them, selecting their most important features while reducing their dimens…
TrioSeq: A Novel Approach to Accelerate Triplet Sequence Alignment on GPUs
Miguel Graça, Aleksandar Ilic
State-of-the-art multiple sequence alignment (MSA) algorithms are based on progressive approaches that rely on pairwise sequence alignment (PSA) to generate guide trees to align al…
Unlocking Personalized Healthcare on Modern CPUs/GPUs: Three-way Gene Interaction Study
Diogo Marques, Rafael Campos, Sergio Santander-Jiménez +3
Developments in Genome-Wide Association Studies have led to the increasing notion that future healthcare techniques will be personalized to the patient, by relying on genetic tests…