3 papers
math.OC2026
A Bilevel Integer Programming Approach for the Synchronous Attractor Control Problem
Kyungduk Moon, Kangbok Lee, Loïc Paulevé
Boolean networks are dynamical models of disease development in which the activation levels of genes are represented by binary variables. Given a Boolean network, controls represen…
q-bio.MN2026
Prediction of source nutrients for microorganisms using metabolic networks
Olivia Bulka, Chabname Ghassemi Nedjad, Loïc Paulevé +2
Metagenomics has lowered the barrier to microbial discovery--enabling the identification of novel microbes without isolation--but cultures remain imperative for the deep study of m…
q-bio.QM2022
BioSimulators: a central registry of simulation engines and services for recommending specific tools
Bilal Shaikh, Lucian P. Smith, Dan Vasilescu +68
Computational models have great potential to accelerate bioscience, bioengineering, and medicine. However, it remains challenging to reproduce and reuse simulations, in part, becau…