4 citations · 4 across the 2 of their papers we have counts for
5 papers
Process Bigraphs and the Architecture of Compositional Systems Biology
Eran Agmon, Ryan K Spangler
Building multiscale biological models requires the integration of independently developed submodels, which means moving shared variables between them and coordinating when each sub…
Matters of Life and Death in Computational Cell Biology
Connor McShaffrey, Eran Agmon, Randall D. Beer
Nearly all cell models explicitly or implicitly deal with the biophysical constraints that must be respected for life to persist. Despite this, there is almost no systematicity in…
From FAIR to CURE: Guidelines for Computational Models of Biological Systems
Herbert M. Sauro, Eran Agmon, Michael L. Blinov +48
Guidelines for managing scientific data have been established under the FAIR principles requiring that data be Findable, Accessible, Interoperable, and Reusable. In many scientific…
Foundations of a Compositional Systems Biology
Eran Agmon
Composition is a powerful principle for systems biology, focused on the interfaces, interconnections, and orchestration of distributed processes to enable integrative multiscale si…
BioSimulators: a central registry of simulation engines and services for recommending specific tools
Bilal Shaikh, Lucian P. Smith, Dan Vasilescu +68
Computational models have great potential to accelerate bioscience, bioengineering, and medicine. However, it remains challenging to reproduce and reuse simulations, in part, becau…