4 papers
Compendium Manager: a tool for coordination of workflow management instances for bulk data processing in Python
Richard J. Abdill, Ran Blekhman
Compendium Manager is a command-line tool written in Python to automate the provisioning, launch, and evaluation of bioinformatics pipelines. Although workflow management tools suc…
A how-to guide for code-sharing in biology
Richard J. Abdill, Emma Talarico, Laura Grieneisen
Computational biology continues to spread into new fields, becoming more accessible to researchers trained in the wet lab who are eager to take advantage of growing datasets, falli…
Generating large-scale network analyses of scientific landscapes in seconds using Dimensions on Google BigQuery
Michele Pasin, Richard Abdill
The growth of large, programatically accessible bibliometrics databases presents new opportunities for complex analyses of publication metadata. In addition to providing a wealth o…
Packaging, containerization, and virtualization of computational omics methods: Advances, challenges, and opportunities
Mohammed Alser, Sharon Waymost, Ram Ayyala +17
Omics software tools have reshaped the landscape of modern biology and become an essential component of biomedical research. The increasing dependence of biomedical scientists on t…