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cs.LG2025
ExPath: Targeted Pathway Inference for Biological Knowledge Bases via Graph Learning and Explanation
Rikuto Kotoge, Ziwei Yang, Zheng Chen +4
Retrieving targeted pathways in biological knowledge bases, particularly when incorporating wet-lab experimental data, remains a challenging task and often requires downstream anal…
cs.LG2024
GeSubNet: Gene Interaction Inference for Disease Subtype Network Generation
Ziwei Yang, Zheng Chen, Xin Liu +5
Retrieving gene functional networks from knowledge databases presents a challenge due to the mismatch between disease networks and subtype-specific variations. Current solutions, i…
cs.LG2022
Cancer Subtyping via Embedded Unsupervised Learning on Transcriptomics Data
Ziwei Yang, Lingwei Zhu, Zheng Chen +4
Cancer is one of the deadliest diseases worldwide. Accurate diagnosis and classification of cancer subtypes are indispensable for effective clinical treatment. Promising results on…