115 citations · 133 across the 8 of their papers we have counts for
9 papers
HALO: Hierarchical Evidence Selection and Reinforcement Learning for Allocating Budgeted Label Optimization from Longitudinal Clinical Records
Huaiyuan Ying, Feiqing Huang, Ryumei Nakada +2
Learning from extensive longitudinal clinical records--spanning repeated encounters, evolving conditions, and heterogeneous documentation--under a finite labeling budget requires s…
DR.EHR: Dense Retrieval for Electronic Health Record with Knowledge Injection and Synthetic Data
Zhengyun Zhao, Huaiyuan Ying, Yue Zhong +1
Electronic Health Records (EHRs) are pivotal in clinical practices, yet their retrieval remains a challenge mainly due to semantic gap issues. Recent advancements in dense retrieva…
CliniQ: A Multi-faceted Benchmark for Electronic Health Record Retrieval with Semantic Match Assessment
Zhengyun Zhao, Hongyi Yuan, Jingjing Liu +5
Electronic Health Record (EHR) retrieval plays a pivotal role in various clinical tasks, but its development has been severely impeded by the lack of publicly available benchmarks.…
GENIE: Generative Note Information Extraction model for structuring EHR data
Huaiyuan Ying, Hongyi Yuan, Jinsen Lu +6
Electronic Health Records (EHRs) hold immense potential for advancing healthcare, offering rich, longitudinal data that combines structured information with valuable insights from…
A Question Answering Based Pipeline for Comprehensive Chinese EHR Information Extraction
Huaiyuan Ying, Sheng Yu
Electronic health records (EHRs) hold significant value for research and applications. As a new way of information extraction, question answering (QA) can extract more flexible inf…
CoRTEx: Contrastive Learning for Representing Terms via Explanations with Applications on Constructing Biomedical Knowledge Graphs
Huaiyuan Ying, Zhengyun Zhao, Yang Zhao +2
Objective: Biomedical Knowledge Graphs play a pivotal role in various biomedical research domains. Concurrently, term clustering emerges as a crucial step in constructing these kno…
BIOS: An Algorithmically Generated Biomedical Knowledge Graph
Sheng Yu, Zheng Yuan, Jun Xia +11
Biomedical knowledge graphs (BioMedKGs) are essential infrastructures for biomedical and healthcare big data and artificial intelligence (AI), facilitating natural language process…
Sentence Alignment with Parallel Documents Facilitates Biomedical Machine Translation
Shengxuan Luo, Huaiyuan Ying, Jiao Li +1
Objective: Today's neural machine translation (NMT) can achieve near human-level translation quality and greatly facilitates international communications, but the lack of parallel…
Biomedical Question Answering: A Survey of Approaches and Challenges
Qiao Jin, Zheng Yuan, Guangzhi Xiong +7
Automatic Question Answering (QA) has been successfully applied in various domains such as search engines and chatbots. Biomedical QA (BQA), as an emerging QA task, enables innovat…