activity
20222025
most citedBIOS: An Algorithmically Generated Biomedical Knowledge Graph

16 citations · 18 across the 6 of their papers we have counts for

collaborators

6 papers

cs.IR2025

DR.EHR: Dense Retrieval for Electronic Health Record with Knowledge Injection and Synthetic Data

Zhengyun Zhao, Huaiyuan Ying, Yue Zhong +1

Electronic Health Records (EHRs) are pivotal in clinical practices, yet their retrieval remains a challenge mainly due to semantic gap issues. Recent advancements in dense retrieva…

cs.IR2025

CliniQ: A Multi-faceted Benchmark for Electronic Health Record Retrieval with Semantic Match Assessment

Zhengyun Zhao, Hongyi Yuan, Jingjing Liu +5

Electronic Health Record (EHR) retrieval plays a pivotal role in various clinical tasks, but its development has been severely impeded by the lack of publicly available benchmarks.…

cs.CL2025★ 2 cited

GENIE: Generative Note Information Extraction model for structuring EHR data

Huaiyuan Ying, Hongyi Yuan, Jinsen Lu +6

Electronic Health Records (EHRs) hold immense potential for advancing healthcare, offering rich, longitudinal data that combines structured information with valuable insights from…

cs.CL2024

A Question Answering Based Pipeline for Comprehensive Chinese EHR Information Extraction

Huaiyuan Ying, Sheng Yu

Electronic health records (EHRs) hold significant value for research and applications. As a new way of information extraction, question answering (QA) can extract more flexible inf…

cs.CL2023

CoRTEx: Contrastive Learning for Representing Terms via Explanations with Applications on Constructing Biomedical Knowledge Graphs

Huaiyuan Ying, Zhengyun Zhao, Yang Zhao +2

Objective: Biomedical Knowledge Graphs play a pivotal role in various biomedical research domains. Concurrently, term clustering emerges as a crucial step in constructing these kno…

cs.CL2022★ 16 cited

BIOS: An Algorithmically Generated Biomedical Knowledge Graph

Sheng Yu, Zheng Yuan, Jun Xia +11

Biomedical knowledge graphs (BioMedKGs) are essential infrastructures for biomedical and healthcare big data and artificial intelligence (AI), facilitating natural language process…