3 papers
q-bio.GN2023
SequenceLab: A Comprehensive Benchmark of Computational Methods for Comparing Genomic Sequences
Maximilian-David Rumpf, Mohammed Alser, Arvid E. Gollwitzer +5
Computational complexity is a key limitation of genomic analyses. Thus, over the last 30 years, researchers have proposed numerous fast heuristic methods that provide computational…
q-bio.GN2022
Going From Molecules to Genomic Variations to Scientific Discovery: Intelligent Algorithms and Architectures for Intelligent Genome Analysis
Mohammed Alser, Joel Lindegger, Can Firtina +5
We now need more than ever to make genome analysis more intelligent. We need to read, analyze, and interpret our genomes not only quickly, but also accurately and efficiently enoug…
q-bio.GN2022
Packaging, containerization, and virtualization of computational omics methods: Advances, challenges, and opportunities
Mohammed Alser, Sharon Waymost, Ram Ayyala +17
Omics software tools have reshaped the landscape of modern biology and become an essential component of biomedical research. The increasing dependence of biomedical scientists on t…