12 citations · 27 across the 5 of their papers we have counts for
5 papers
PSBench: a large-scale benchmark for estimating the accuracy of protein complex structural models
Pawan Neupane, Jian Liu, Jianlin Cheng
Predicting protein complex structures is essential for protein function analysis, protein design, and drug discovery. While AI methods like AlphaFold can predict accurate structura…
Assessing the potential of deep learning for protein-ligand docking
Alex Morehead, Nabin Giri, Jian Liu +2
The effects of ligand binding on protein structures and their in vivo functions carry numerous implications for modern biomedical research and biotechnology development efforts suc…
Diffusion Models in Bioinformatics: A New Wave of Deep Learning Revolution in Action
Zhiye Guo, Jian Liu, Yanli Wang +4
Denoising diffusion models have emerged as one of the most powerful generative models in recent years. They have achieved remarkable success in many fields, such as computer vision…
EGR: Equivariant Graph Refinement and Assessment of 3D Protein Complex Structures
Alex Morehead, Xiao Chen, Tianqi Wu +2
Protein complexes are macromolecules essential to the functioning and well-being of all living organisms. As the structure of a protein complex, in particular its region of interac…
DProQ: A Gated-Graph Transformer for Protein Complex Structure Assessment
Xiao Chen, Alex Morehead, Jian Liu +1
Proteins interact to form complexes to carry out essential biological functions. Computational methods have been developed to predict the structures of protein complexes. However,…