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Elastic-Degenerate String Matching with 1 Error
Giulia Bernardini, Estéban Gabory, Solon P. Pissis +3
An elastic-degenerate string is a sequence of finite sets of strings of total length , introduced to represent a set of related DNA sequences, also known as a pangenome. The…
cs.DS2021
String Sampling with Bidirectional String Anchors
Grigorios Loukides, Solon P. Pissis, Michelle Sweering
The minimizers sampling mechanism is a popular mechanism for string sampling introduced independently by Schleimer et al. [SIGMOD 2003] and by Roberts et al. [Bioinf. 2004]. Given…