2 citations · 3 across the 4 of their papers we have counts for
4 papers
Screening of Biosecurity Features in Metagenomic Data with Evo 2 Probes
Jeremy Guntoro, Alexander Dack, Dylan Danno +3
Genomic foundation models such as Evo 2 learn rich sequence representations, but their value for biosecurity screening is largely unexplored. We ask how much biosecurity-relevant s…
Recurrent neural chemical reaction networks trained to switch dynamical behaviours through learned bifurcations
Alexander Dack, Tomislav Plesa, Thomas E. Ouldridge
Both natural and synthetic chemical systems not only exhibit a range of non-trivial dynamics, but also transition between qualitatively different dynamical behaviours as environmen…
Recurrent neural chemical reaction networks that approximate arbitrary dynamics
Alexander Dack, Benjamin Qureshi, Thomas E. Ouldridge +1
Many important phenomena in biochemistry and biology exploit dynamical features such as multi-stability, oscillations, and chaos. Construction of novel chemical systems with such r…
Integral feedback in synthetic biology: Negative-equilibrium catastrophe
Tomislav Plesa, Alex Dack, Thomas E. Ouldridge
A central goal of synthetic biology is the design of molecular controllers that can manipulate the dynamics of intracellular networks in a stable and accurate manner. To address th…