244 citations · 684 across the 16 of their papers we have counts for
4 papers · 1 filter
Phage family classification under Caudoviricetes: a review of current tools using the latest ICTV classification framework
Yilin Zhu, Jiayu Shang, Cheng Peng +1
Bacteriophages, which are viruses infecting bacteria, are the most ubiquitous and diverse entities in the biosphere. There is accumulating evidence revealing their important roles…
PhaTYP: Predicting the lifestyle for bacteriophages using BERT
Jiayu Shang, Xubo Tang, Yanni Sun
Bacteriophages (or phages), which infect bacteria, have two distinct lifestyles: virulent and temperate. Predicting the lifestyle of phages helps decipher their interactions with t…
Accurate identification of bacteriophages from metagenomic data using Transformer
Jiayu Shang, Xubo Tang, Ruocheng Guo +1
Motivation: Bacteriophages are viruses infecting bacteria. Being key players in microbial communities, they can regulate the composition/function of microbiome by infecting their b…
CHERRY: a Computational metHod for accuratE pRediction of virus-pRokarYotic interactions using a graph encoder-decoder model
Jiayu Shang, Yanni Sun
Prokaryotic viruses, which infect bacteria and archaea, are key players in microbial communities. Predicting the hosts of prokaryotic viruses helps decipher the dynamic relationshi…