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cs.LG2025
GenePheno: Interpretable Gene Knockout-Induced Phenotype Abnormality Prediction from Gene Sequences
Jingquan Yan, Yuwei Miao, Lei Yu +4
Exploring how genetic sequences shape phenotypes is a fundamental challenge in biology and a key step toward scalable, hypothesis-driven experimentation. The task is complicated by…
cs.LG2025
TRIDENT: Tri-Modal Molecular Representation Learning with Taxonomic Annotations and Local Correspondence
Feng Jiang, Mangal Prakash, Hehuan Ma +6
Molecular property prediction aims to learn representations that map chemical structures to functional properties. While multimodal learning has emerged as a powerful paradigm to l…
cs.LG2025
GoBERT: Gene Ontology Graph Informed BERT for Universal Gene Function Prediction
Yuwei Miao, Yuzhi Guo, Hehuan Ma +4
Exploring the functions of genes and gene products is crucial to a wide range of fields, including medical research, evolutionary biology, and environmental science. However, disco…