activity
20212026
most citedPredicting Gene-Disease Associations with Knowledge Graph Embeddings over Multiple Ontologies

7 citations · 11 across the 5 of their papers we have counts for

collaborators

5 papers

cs.LG2026

Hakken: Predicting future discoveries to fill the gaps in today's knowledge

Tarek R. Besold, Uchenna Akujuobi, Pablo Sanchez +21

We present Hakken, a domain-agnostic prediction and explanation system performing knowledge prediction, i.e., growing scientific knowledge by establishing novel relationships, ones…

cs.AI2026

Shaping Scientific Explanations to Expert Perspectives with Persona-Conditioned Reinforcement Learning

Susana Nunes, Tiago Guerreiro, Catia Pesquita

Explainable AI is increasingly important to scientific discovery. However, existing methods largely ignore that explanation quality is not universal: experts differ in how they ass…

q-bio.QM2025

ECKO: Explainable Clinical Knowledge for Oncology

Marta Contreiras Silva, Daniel Faria, Laura Balbi +13

Personalized oncology aims to tailor treatment strategies to the unique molecular and clinical profiles of individual patients, moving beyond the traditional paradigm of treating t…

cs.AI2025★ 4 cited

Rewarding Explainability in Drug Repurposing with Knowledge Graphs

Susana Nunes, Samy Badreddine, Catia Pesquita

Knowledge graphs (KGs) are powerful tools for modelling complex, multi-relational data and supporting hypothesis generation, particularly in applications like drug repurposing. How…

cs.LG2021★ 7 cited

Predicting Gene-Disease Associations with Knowledge Graph Embeddings over Multiple Ontologies

Susana Nunes, Rita T. Sousa, Catia Pesquita

Ontology-based approaches for predicting gene-disease associations include the more classical semantic similarity methods and more recently knowledge graph embeddings. While semant…