2 citations · 3 across the 3 of their papers we have counts for
3 papers
Faster Maximal Exact Matches with Lazy LCP Evaluation
Adrián Goga, Lore Depuydt, Nathaniel K. Brown +3
MONI (Rossi et al., {\it JCB} 2022) is a BWT-based compressed index for computing the matching statistics and maximal exact matches (MEMs) of a pattern (usually a DNA read) with re…
MARIA: Multiple-alignment -index with aggregation
Adrián Goga, Andrej Baláž, Alessia Petescia +1
There now exist compact indexes that can efficiently list all the occurrences of a pattern in a dataset consisting of thousands of genomes, or even all the occurrences of all the p…
SnakeLines: integrated set of computational pipelines for sequencing reads
Jaroslav Budis, Werner Krampl, Marcel Kucharik +12
Background: With the rapid growth of massively parallel sequencing technologies, still more laboratories are utilizing sequenced DNA fragments for genomic analyses. Interpretation…