4 citations · 11 across the 7 of their papers we have counts for
8 papers
Trust, but Verify: Rigorously Profiling Best-Effort High-Performance Computing for Digital Evolution
Matthew Andres Moreno, Santiago Rodriguez Papa, Charles Ofria +2
Developments in high-performance computing (HPC) technology continue to drastically increase quantities of available processing power. In the context of digital evolution, this exp…
Phylotrack: C++ and Python libraries for in silico phylogenetic tracking
Emily Dolson, Santiago Rodriguez-Papa, Matthew Andres Moreno
In silico evolution instantiates the processes of heredity, variation, and differential reproductive success (the three "ingredients" for evolution by natural selection) within dig…
Ecology, Spatial Structure, and Selection Pressure Induce Strong Signatures in Phylogenetic Structure
Matthew Andres Moreno, Santiago Rodriguez-Papa, Emily Dolson
Evolutionary dynamics are shaped by a variety of fundamental, generic drivers, including spatial structure, ecology, and selection pressure. These drivers impact the trajectory of…
Case Study of Novelty, Complexity, and Adaptation in a Multicellular System
Matthew Andres Moreno, Santiago Rodriguez Papa, Charles Ofria
Continuing generation of novelty, complexity, and adaptation are well-established as core aspects of open-ended evolution. However, it has yet to be firmly established to what exte…
Analysis of Phylogeny Tracking Algorithms for Serial and Multiprocess Applications
Matthew Andres Moreno, Santiago Rodriguez Papa, Emily Dolson
Since the advent of modern bioinformatics, the challenging, multifaceted problem of reconstructing phylogenetic history from biological sequences has hatched perennial statistical…
Algorithms for Efficient, Compact Online Data Stream Curation
Matthew Andres Moreno, Santiago Rodriguez Papa, Emily Dolson
Data stream algorithms tackle operations on high-volume sequences of read-once data items. Data stream scenarios include inherently real-time systems like sensor networks and finan…