3 papers
cs.LG2022
Efficient Approximate Kernel Based Spike Sequence Classification
Sarwan Ali, Bikram Sahoo, Muhammad Asad Khan +3
Machine learning (ML) models, such as SVM, for tasks like classification and clustering of sequences, require a definition of distance/similarity between pairs of sequences. Severa…
q-bio.GN2022
Benchmarking Machine Learning Robustness in Covid-19 Genome Sequence Classification
Sarwan Ali, Bikram Sahoo, Alexander Zelikovskiy +2
The rapid spread of the COVID-19 pandemic has resulted in an unprecedented amount of sequence data of the SARS-CoV-2 genome -- millions of sequences and counting. This amount of da…
q-bio.QM2021
A k-mer Based Approach for SARS-CoV-2 Variant Identification
Sarwan Ali, Bikram Sahoo, Naimat Ullah +3
With the rapid spread of the novel coronavirus (COVID-19) across the globe and its continuous mutation, it is of pivotal importance to design a system to identify different known (…