3 papers
q-bio.QM2026
Loom: Multi-Region Analysis of Spatial Transcriptomics with Local Neighborhoods and Global Trajectories
Siyuan Zhao, Nafiul Nipu, Hossein Fathollahian +4
We present Loom, a spatial transcriptomics (ST) visual computing system to support the analysis of pseudo-temporal trajectories, comparative investigation across samples and region…
q-bio.QM2025
Attention-based ROI Discovery in 3D Tissue Images
Hossein Fathollahian, Siyuan Zhao, Nafiul Nipu +1
High-dimensional tissue imaging generates highly complex 3D data containing multiple biomarkers, making it challenging to identify biologically relevant regions without an expert u…
cs.HC2021
THALIS: Human-Machine Analysis of Longitudinal Symptoms in Cancer Therapy
Carla Floricel, Nafiul Nipu, Mikayla Biggs +6
Although cancer patients survive years after oncologic therapy, they are plagued with long-lasting or permanent residual symptoms, whose severity, rate of development, and resoluti…