3 papers
cs.LG2026
PDFBench: A Benchmark for De novo Protein Design from Function
Jiahao Kuang, Nuowei Liu, Jie Wang +3
Function-guided protein design is a crucial task with significant applications in drug discovery and enzyme engineering. However, the field lacks a unified and comprehensive evalua…
cs.CL2025
DVAGen: Dynamic Vocabulary Augmented Generation
Wei Du, Nuowei Liu, Jie Wang +4
Language models trained with a fixed vocabulary struggle to generalize to novel or out-of-vocabulary words, limiting their flexibility in handling diverse token combinations. Exist…
cs.LG2025
Protein Design with Dynamic Protein Vocabulary
Nuowei Liu, Jiahao Kuang, Yanting Liu +4
Protein design is a fundamental challenge in biotechnology, aiming to design novel sequences with specific functions within the vast space of possible proteins. Recent advances in…