3 papers
cond-mat.soft2026
Nucleosome simulations suggest mechanisms of electrostatically-driven mesoscale chromatin evolution
Siddhartha G. Jena
Nucleosomes are structures made up of proteins called histones that bind and compact DNA, driving the mesoscale organization of the chromatin polymer. Although histone proteins hav…
stat.AP2023
Answering open questions in biology using spatial genomics and structured methods
Siddhartha G Jena, Archit Verma, Barbara E Engelhardt
Genomics methods have uncovered patterns in a range of biological systems, but obscure important aspects of cell behavior: the shape, relative locations of, movement of, and intera…
math.CO2021
Restricted Positional Games
Pranav Avadhanam, Siddhartha G. Jena
A positional game is a game where two players sequentially label vertices of a hypergraph, consisting of a board and a collection of winning sets, with colors assigned to each play…