2 papers
q-bio.GN2024
Zimin patterns in genomes
Nikol Chantzi, Ioannis Mouratidis, Ilias Georgakopoulos-Soares
Zimin words are words that have the same prefix and suffix. They are unavoidable patterns, with all sufficiently large strings encompassing them. Here, we examine for the first tim…
q-bio.QM2024
MAFin: Motif Detection in Multiple Alignment Files
Michail Patsakis, Kimonas Provatas, Fotis A. Baltoumas +4
Motivation: Genome and Proteome Alignments, represented by the Multiple Alignment File (MAF) format, have become a standard approach in the field of comparative genomics and proteo…