2 papers
q-bio.GN2021
Temporal epistasis inference from more than 3,500,000 SARS-CoV-2 Genomic Sequences
Hong-Li Zeng, Yue Liu, Vito Dichio +1
We use Direct Coupling Analysis (DCA) to determine epistatic interactions between loci of variability of the SARS-CoV-2 virus, segmenting genomes by month of sampling. We use full-…
q-bio.PE2021
Mutation frequency time series reveal complex mixtures of clones in the world-wide SARS-CoV-2 viral population
Hong-Li Zeng, Yue Liu, Vito Dichio +3
We compute the allele frequencies of the alpha (B.1.1.7), beta (B.1.351) and delta (B.167.2) variants of SARS-CoV-2 from almost two million genome sequences on the GISAID repositor…