6 papers
Learning Adaptive Perturbation-Conditioned Contexts for Robust Transcriptional Response Prediction
Yinhua Piao, Hyomin Kim, Seonghwan Kim +7
Predicting high-dimensional transcriptional responses to genetic perturbations is challenging because signals are sparse and experimental noise is severe. Existing methods often su…
Progressive Multi-Agent Reasoning for Biological Perturbation Prediction
Hyomin Kim, Sang-Yeon Hwang, Jaechang Lim +6
Predicting gene regulation responses to biological perturbations requires reasoning about underlying biological causalities. While large language models (LLMs) show promise for suc…
3D Interaction Geometric Pre-training for Molecular Relational Learning
Namkyeong Lee, Yunhak Oh, Heewoong Noh +5
Molecular Relational Learning (MRL) is a rapidly growing field that focuses on understanding the interaction dynamics between molecules, which is crucial for applications ranging f…
Oldie but Goodie: Re-illuminating Label Propagation on Graphs with Partially Observed Features
Sukwon Yun, Xin Liu, Yunhak Oh +4
In real-world graphs, we often encounter missing feature situations where a few or the majority of node features, e.g., sensitive information, are missed. In such scenarios, direct…
Global Context-aware Representation Learning for Spatially Resolved Transcriptomics
Yunhak Oh, Junseok Lee, Yeongmin Kim +3
Spatially Resolved Transcriptomics (SRT) is a cutting-edge technique that captures the spatial context of cells within tissues, enabling the study of complex biological networks. R…
Subgraph Federated Learning for Local Generalization
Sungwon Kim, Yoonho Lee, Yunhak Oh +6
Federated Learning (FL) on graphs enables collaborative model training to enhance performance without compromising the privacy of each client. However, existing methods often overl…