3 papers
physics.bio-ph2021
Intra-Chromosomal Potentials from Nucleosomal Positioning Data
Kunhe Li, Nestor Norio Oiwa, Sujeet Kumar Mishra +1
No systematic method exists to derive intra-chromosomal potentials between nucleosomes along a chromosome consistently across a given genome. Such potentials can yield information…
physics.bio-ph2021
Prediction and Comparative Analysis of CTCF Binding Sites based on a First Principle Approach
Nestor Norio Oiwa, Kunhe Li, Claudette E. Cordeiro +1
We calculated the patterns for the CCCTC transcription factor (CTCF) binding sites across many genomes on a first principle approach. The validation of the first principle method w…
q-bio.BM2015
The Electronic Behavior of Zinc-Finger Protein Binding Sites in the Context of the DNA Extended Ladder Model
Nestor Norio Oiwa, Claudette Cordeiro, Dieter W. Heermann
The eukaryotic Cys2His2 zinc finger proteins bind to DNA ubiquitously at highly conserved domains, responsible for gene regulation and the spatial organization of DNA. To study and…