11 papers
Walrus: A Cross-Domain Foundation Model for Continuum Dynamics
Michael McCabe, Payel Mukhopadhyay, Tanya Marwah +22
Foundation models have transformed machine learning for language and vision, but achieving comparable impact in physical simulation remains a challenge. Data heterogeneity and unst…
Protein Design with Agent Rosetta: A Case Study for Specialized Scientific Agents
Jacopo Teneggi, S. M. Bargeen A. Turzo, Tanya Marwah +4
Large language models (LLMs) are capable of emulating reasoning and using tools, creating opportunities for autonomous agents that execute complex scientific tasks. Protein design…
Emergent Transfer of a Physics Foundation Model from Simulation to Laboratory Turbulence
Payel Mukhopadhyay, Stefan S. Nixon, Romain Watteaux +20
Whether physics foundation models can be usefully deployed on laboratory experiments remains an open question for scientific machine learning (ML). We test this question on the Ray…
MIMIC: A Generative Multimodal Foundation Model for Biomolecules
Siavash Golkar, Jake Kovalic, Irina Espejo Morales +28
Biological function emerges from coupled constraints across sequence, structure, regulation, evolution, and cellular context, yet most foundation models in biology are trained with…
Predicting partially observable dynamical systems via diffusion models with a multiscale inference scheme
Rudy Morel, Francesco Pio Ramunno, Jeff Shen +18
Conditional diffusion models provide a natural framework for probabilistic prediction of dynamical systems and have been successfully applied to fluid dynamics and weather predicti…
Universal Spectral Tokenization via Self-Supervised Panchromatic Representation Learning
Jeff Shen, Francois Lanusse, Liam Holden Parker +24
Sequential scientific data span many resolutions and domains, and unifying them into a common representation is a key step toward developing foundation models for the sciences. Ast…