11 citations · 24 across the 5 of their papers we have counts for
5 papers
No Foundations without Foundations -- Why semi-mechanistic models are essential for regulatory biology
Luka Kovačević, Thomas Gaudelet, James Opzoomer +5
Despite substantial efforts, deep learning has not yet delivered a transformative impact on elucidating regulatory biology, particularly in the realm of predicting gene expression…
BioNeMo Framework: a modular, high-performance library for AI model development in drug discovery
Peter St. John, Dejun Lin, Polina Binder +89
Artificial Intelligence models encoding biology and chemistry are opening new routes to high-throughput and high-quality in-silico drug development. However, their training increas…
Season combinatorial intervention predictions with Salt & Peper
Thomas Gaudelet, Alice Del Vecchio, Eli M Carrami +4
Interventions play a pivotal role in the study of complex biological systems. In drug discovery, genetic interventions (such as CRISPR base editing) have become central to both ide…
PyRelationAL: a python library for active learning research and development
Paul Scherer, Alison Pouplin, Alice Del Vecchio +6
Active learning (AL) is a sub-field of ML focused on the development of methods to iteratively and economically acquire data by strategically querying new data points that are the…
SubTab: Subsetting Features of Tabular Data for Self-Supervised Representation Learning
Talip Ucar, Ehsan Hajiramezanali, Lindsay Edwards
Self-supervised learning has been shown to be very effective in learning useful representations, and yet much of the success is achieved in data types such as images, audio, and te…