2 papers
q-bio.BM2026
Rethinking Benchmarks and Models for Enzyme Specificity Prediction
Elizabeth H. Mahood, Natália KomornÃková, Tomáš Pluskal +1
Artificial Intelligence has had a profound impact on the biological sciences, and in particular has accelerated research on protein form and function. Enzymes are no exception: a s…
q-bio.BM2025
PepTune: De Novo Generation of Therapeutic Peptides with Multi-Objective-Guided Discrete Diffusion
Sophia Tang, Yinuo Zhang, Pranam Chatterjee
We present PepTune, a multi-objective discrete diffusion model for simultaneous generation and optimization of therapeutic peptide SMILES. Built on the Masked Discrete Language Mod…