most citedRapid GPU-Based Pangenome Graph Layout

3 citations · 3 across the 4 of their papers we have counts for

collaborators

8 papers

cs.DC2026

SpSYRK: Half the Work in Distributed Sparse Matrix Multiplication

Thomas McFarland, Julian Bellavita, Giulia Guidi

The symmetric rank- update (SYRK), $\C = \A\A^\top$, computes the dot product between each pair of rows of $\A$, producing the Gram matrix $\C$. Its sparse variant underpins sim…

cs.DC2026

Mixed-Precision Communication-Avoiding SGD for Generalized Linear Models on GPUs

Aditya Devarakonda, Irene Simó Muñoz, Giulia Guidi

Distributed stochastic gradient descent (SGD) is limited by communication rather than computation, since each iteration requires an AllReduce across processes. Communication-avoidi…

cs.DC20263 cited

Rapid GPU-Based Pangenome Graph Layout

Jiajie Li, Jan-Niklas Schmelzle, Yixiao Du +6

Computational Pangenomics is an emerging field that studies genetic variation using a graph structure encompassing multiple genomes. Visualizing pangenome graphs is vital for under…

cs.DC2026

Ocean: Fast Estimation-Based Sparse General Matrix-Matrix Multiplication on GPU

Yifan Li, Giulia Guidi

In computational science and data analytics, many workloads involve irregular and sparse computations that are inherently difficult to optimize for modern hardware. A key kernel is…

cs.DC2026

Communication-Avoiding SpGEMM via Trident Partitioning on Hierarchical GPU Interconnects

Julian Bellavita, Lorenzo Pichetti, Thomas Pasquali +2

The multiplication of two sparse matrices, known as SpGEMM, is a key kernel in scientific computing and large-scale data analytics, underpinning graph algorithms, machine learning,…

cs.DC2026

Communication-Avoiding Linear Algebraic Kernel K-Means on GPUs

Julian Bellavita, Matthew Rubino, Nakul Iyer +4

Clustering is an important tool in data analysis, with K-means being popular for its simplicity and versatility. However, it cannot handle non-linearly separable clusters. Kernel K…