2 papers
q-bio.GN2021
A step toward a reinforcement learning de novo genome assembler
Kleber Padovani, Roberto Xavier, Rafael Cabral Borges +4
De novo genome assembly is a relevant but computationally complex task in genomics. Although de novo assemblers have been used successfully in several genomics projects, there is s…
cs.DS2018
A framework for cost-constrained genome rearrangement under Double Cut and Join
Pijus Simonaitis, Annie Chateau, Krister M. Swenson
The study of genome rearrangement has many flavours, but they all are somehow tied to edit distances on variations of a multi-graph called the breakpoint graph. We study a weighted…