32 citations · 68 across the 6 of their papers we have counts for
6 papers
Contrastive learning of T cell receptor representations
Yuta Nagano, Andrew Pyo, Martina Milighetti +4
Computational prediction of the interaction of T cell receptors (TCRs) and their ligands is a grand challenge in immunology. Despite advances in high-throughput assays, specificity…
A mathematical study of CD8+ T cell responses calibrated with human data
John Paul Gosling, Sheeja M. Krishnan, Grant Lythe +3
Complete understanding of the mechanisms regulating the proliferation and differentiation that takes place during human immune CD8+ T cell responses is still lacking. Human clinica…
Hybrid spreading mechanisms and T cell activation shape the dynamics of HIV-1 infection
Changwang Zhang, Shi Zhou, Elisabetta Groppelli +5
HIV-1 can disseminate between susceptible cells by two mechanisms: cell-free infection following fluid-phase diffusion of virions and by highly-efficient direct cell-to-cell transm…
LeoTask: a fast, flexible and reliable framework for computational research
Changwang Zhang, Shi Zhou, Benjamin M. Chain
LeoTask is a Java library for computation-intensive and time-consuming research tasks. It automatically executes tasks in parallel on multiple CPU cores on a computing facility. It…
Optimizing Hybrid Spreading in Metapopulations
Changwang Zhang, Shi Zhou, Joel C. Miller +2
Epidemic spreading phenomena are ubiquitous in nature and society. Examples include the spreading of diseases, information, and computer viruses. Epidemics can spread by local spre…
Hybrid Epidemics - A Case Study on Computer Worm Conficker
Changwang Zhang, Shi Zhou, Benjamin M. Chain
Conficker is a computer worm that erupted on the Internet in 2008. It is unique in combining three different spreading strategies: local probing, neighbourhood probing, and global…