2 papers
q-bio.BM2018
Kinematic Flexibility Analysis: Hydrogen Bonding Patterns Impart a Spatial Hierarchy of Protein Motion
Dominik Budday, Sigrid Leyendecker, Henry van den Bedem
Elastic network models (ENM) and constraint-based, topological rigidity analysis are two distinct, coarse-grained approaches to study conformational flexibility of macromolecules.…
cs.RO2016
Collision-Free Poisson Motion Planning in Ultra High-Dimensional Molecular Conformation Spaces
Rasmus Fonseca, Dominik Budday, Henry van den Bedem
The function of protein, RNA, and DNA is modulated by fast, dynamic exchanges between three-dimensional conformations. Conformational sampling of biomolecules with exact and nullsp…